PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast07G041000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 704aa    MW: 82242.6 Da    PI: 6.445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast07G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-16257348199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv  p + ++  ++ +p +f    +  +e+++ ++l+ +sg++W+v+l    ++gr  l+ GWkeF ++++++ g f+vF++dg+s+f 
  Brast07G041000.1.p 257 FFKVVFPGYCTE--QVGIPSSFSGFLE--NESPRVVSLRGPSGNTWRVEL-LADSKGRLHLAHGWKEFFNDHRIQLGYFLVFRYDGQSQF- 341
                         566665555554..4789999974444..457889***************.5677778999************************99999. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                           v vf+k
  Brast07G041000.1.p 342 -SVLVFDK 348
                         .9999987 PP

2B356.26.5e-18592687398
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         k+lt s v  +  +v+p +f++++  k   s+++tl d++ + Wev + y+ + ++    +++GW  F+  n+L+  D++vF+  +++e +
  Brast07G041000.1.p 592 KALTYSEVYMTYFMVIPHEFVQKYFPK--HSRKMTLWDPQAKPWEVSYVYWDSCSSsgAAFSAGWGAFAAYNNLEKSDVCVFEILDDDEYN 680
                         7788899999999***********744..6779***************996666666899***********************88889998 PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v+++r
  Brast07G041000.1.p 681 IKVHIHR 687
                         9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-21252351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22253351IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-18255347No hitNo description
PfamPF023624.6E-13257348IPR003340B3 DNA binding domain
SMARTSM010191.5E-13257349IPR003340B3 DNA binding domain
PROSITE profilePS5086313.521272349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-22584687IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-20588689IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.07590689IPR003340B3 DNA binding domain
SMARTSM010193.4E-12590689IPR003340B3 DNA binding domain
PfamPF023621.3E-15592687IPR003340B3 DNA binding domain
CDDcd100171.20E-21592687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVAVKKQNNT MDMVSNTKEV KVKEEERDNL VNDKVRRKEM EMKQNKEEGN KKKDKEKKRA  60
LKPKVAKYKK IKGKNRRDKE ERGDECQREK DERRKEKEHN ERVDEEKEKK DTEEEQKKMK  120
GKERKEEWPR EMEEKEQRER VDKEKAKKDK KEKQKKRKEK KLHEDRKRKG EQNEMNKERE  180
EWQRETEKIE KMEILDKEKA KKDKEEKKQK RSEKEGQEKE VQSDREMREQ MELEVEEDEQ  240
NERNGNEEPT QNAFPNFFKV VFPGYCTEQV GIPSSFSGFL ENESPRVVSL RGPSGNTWRV  300
ELLADSKGRL HLAHGWKEFF NDHRIQLGYF LVFRYDGQSQ FSVLVFDKSG CEAHDAFLAR  360
PRNAAVTNDG GGMSTNVDGM DPQEEHMEED SCFLAEDDKE DMDTNAGDTN PQEEDTGGEE  420
PECSEEEDDE WHMGSDDASD TSEKNDQDDN ANYAPDTSED DGVYHGLSTR KKRFRKIDDI  480
LSEDDRRASK KRKVVRKRSV ASPHSSASKV ATSGTIMTDT VNIVKSIAPA RPRFQCTLFN  540
KSNNVPRPGK VLTKVQRRPA SISQRRPVTE EEKSDALERA MRFRSLRPFT HKALTYSEVY  600
MTYFMVIPHE FVQKYFPKHS RKMTLWDPQA KPWEVSYVYW DSCSSSGAAF SAGWGAFAAY  660
NNLEKSDVCV FEILDDDEYN IKVHIHRVVQ EITPCMHTLI GGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470492KKRFRKIDDILSEDDRRASKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752141.10.0PREDICTED: myb-like protein X isoform X2
TrEMBLI1H0U10.0I1H0U1_BRADI; Uncharacterized protein
STRINGBRADI1G48690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-16B3 family protein